Nakada

Model name: Nakada2022
Overall impression of the model: nearly recoded
Curators: Surbhit Wagle
Serena Onwuka
Janine Lückgen
Mojca Frank Bertoncelj
Biological context: Baseline cytokine concentrations as potential predictors of rheumatoid arthritis inflammatory response to biologics
Paper: https://bpspubs.onlinelibrary.wiley.com/doi/10.1111/bph.15845
Does the model reproduce a figure? (Figure number) no
All equations translated to SBML? nearly
Is model annotated? no
What was the source of the model? (equations in the paper or file) equations

Notes:

  • Curator's note: "Roughly modeled the INFX drug interactions with its ligand and receptor TNF; the challenges were trying to unify the schematic provided with the differential equations, and the supplementary equations and syntaxes carried out in Phoenix. One plausible issue is the paper defining Lf_t = Ls_t - LC_i when no equation was provided for that"
  • 14 reactions translated into SBML