Talk2Biomodels

Talk2Biomodels is an AI-agent designed to interact with mathematical models in systems biology. You can choose to either interact with a model available in the BioModels database or upload your own model.

Talk2BioModels

What can Talk2Biomodels do?

✅ Interact with biological ODE models using natural language - just follow a simple prompt syntax
✅ Upload or fetch SBML models directly from BioModels database
✅ Run forward simulations
✅ Visualize and explore simulation results through interactive plots and Q&A
✅ Perform model analyses like steady-state and parameter scans
✅ Understand species roles via readable annotations and functional insights
✅ Get assistance with article comprehension using text-based retrieval (RAG)

Please refer here for FAQs and real-life use cases.

How to access Talk2Biomodels?

There are 2 ways to access Talk2Biomodels:

Set up the Streamlit app: Follow the instructions on the home page to set up an launch the Streamlit app.
Use the PyPI package: Follow the tutorial for step-by-step guidance on how to use the PyPI package.